Index _ | A | B | C | D | E | F | G | M | N | P | R | S | T | V | W _ __iter__() (pasted._generator.StructureGenerator method) __repr__() (pasted._config.GeneratorConfig method) (pasted._generator.StructureGenerator method) (pasted._optimizer.EvalContext method) (pasted._optimizer.StructureOptimizer method) A add_hydrogen (pasted._config.GeneratorConfig attribute) add_hydrogen() (in module pasted._placement) affine_jitter (pasted._config.GeneratorConfig attribute) affine_shear (pasted._config.GeneratorConfig attribute) affine_strength (pasted._config.GeneratorConfig attribute) affine_stretch (pasted._config.GeneratorConfig attribute) ALL_METRICS (in module pasted._atoms), [1] atoms (pasted._optimizer.EvalContext attribute) B best_f (pasted._optimizer.EvalContext attribute) bond_range (pasted._config.GeneratorConfig attribute) branch_prob (pasted._config.GeneratorConfig attribute) C center_z (pasted._config.GeneratorConfig attribute) chain_bias (pasted._config.GeneratorConfig attribute) chain_persist (pasted._config.GeneratorConfig attribute) charge (pasted._config.GeneratorConfig attribute) (pasted._optimizer.EvalContext attribute) compute_all_metrics() (in module pasted._metrics) compute_angular_entropy() (in module pasted._metrics) compute_charge_frustration() (in module pasted._metrics), [1] compute_graph_metrics() (in module pasted._metrics) compute_h_atom() (in module pasted._metrics) compute_h_spatial() (in module pasted._metrics) compute_moran_I_chi() (in module pasted._metrics), [1] compute_rdf_deviation() (in module pasted._metrics) compute_ring_fraction() (in module pasted._metrics), [1] compute_shape_anisotropy() (in module pasted._metrics) compute_steinhardt() (in module pasted._metrics) compute_steinhardt_per_atom() (in module pasted._metrics) config (pasted._generator.StructureGenerator property) convergence_tol (pasted._config.GeneratorConfig attribute) coord_range (pasted._config.GeneratorConfig attribute) cov_radius_ang() (in module pasted._atoms) cov_scale (pasted._config.GeneratorConfig attribute) cutoff (pasted._config.GeneratorConfig attribute) (pasted._generator.StructureGenerator property) (pasted._optimizer.EvalContext attribute) (pasted._optimizer.StructureOptimizer property) D default_element_pool() (in module pasted._atoms) E element_fractions (pasted._config.GeneratorConfig attribute) element_max_counts (pasted._config.GeneratorConfig attribute) element_min_counts (pasted._config.GeneratorConfig attribute) element_pool (pasted._generator.StructureGenerator property) (pasted._optimizer.EvalContext attribute) (pasted._optimizer.StructureOptimizer property) elements (pasted._config.GeneratorConfig attribute) EvalContext (class in pasted._optimizer) F f_current (pasted._optimizer.EvalContext attribute) filters (pasted._config.GeneratorConfig attribute) format_xyz() (in module pasted._io) G generate() (in module pasted._generator) (pasted._generator.StructureGenerator method) GeneratorConfig (class in pasted._config) M max_steps (pasted._optimizer.EvalContext attribute) maxent_cutoff_scale (pasted._config.GeneratorConfig attribute) maxent_lr (pasted._config.GeneratorConfig attribute) maxent_steps (pasted._config.GeneratorConfig attribute) method (pasted._optimizer.EvalContext attribute) metrics (pasted._optimizer.EvalContext attribute) mode (pasted._config.GeneratorConfig attribute) module pasted._atoms pasted._io pasted._metrics pasted._placement mult (pasted._config.GeneratorConfig attribute) (pasted._optimizer.EvalContext attribute) N n_atoms (pasted._config.GeneratorConfig attribute) (pasted._optimizer.EvalContext attribute) n_bins (pasted._config.GeneratorConfig attribute) n_replicas (pasted._optimizer.EvalContext attribute) n_restarts (pasted._optimizer.EvalContext attribute) n_samples (pasted._config.GeneratorConfig attribute) n_success (pasted._config.GeneratorConfig attribute) P parse_element_spec() (in module pasted._atoms), [1] parse_filter() (in module pasted._atoms) parse_int_range() (in module pasted._atoms) parse_lo_hi() (in module pasted._atoms) parse_objective_spec() (in module pasted._optimizer) parse_xyz() (in module pasted._io) passes_filters() (in module pasted._metrics) pasted._atoms module pasted._io module pasted._metrics module pasted._placement module pauling_electronegativity() (in module pasted._atoms), [1] PAULING_EN_FALLBACK (in module pasted._atoms), [1] per_atom_q6 (pasted._optimizer.EvalContext attribute) place_chain() (in module pasted._placement) place_gas() (in module pasted._placement) place_maxent() (in module pasted._placement) place_shell() (in module pasted._placement) positions (pasted._optimizer.EvalContext attribute) progress (pasted._optimizer.EvalContext property) R read_xyz() (in module pasted._generator) region (pasted._config.GeneratorConfig attribute) relax_cycles (pasted._config.GeneratorConfig attribute) relax_positions() (in module pasted._placement) replica_idx (pasted._optimizer.EvalContext attribute) replica_temperature (pasted._optimizer.EvalContext attribute) restart_idx (pasted._optimizer.EvalContext attribute) run() (pasted._optimizer.StructureOptimizer method) S seed (pasted._config.GeneratorConfig attribute) (pasted._optimizer.EvalContext attribute) shell_radius (pasted._config.GeneratorConfig attribute) step (pasted._optimizer.EvalContext attribute) stream() (pasted._generator.StructureGenerator method) StructureGenerator (class in pasted._generator) StructureOptimizer (class in pasted._optimizer) T T_end (pasted._optimizer.EvalContext attribute) T_start (pasted._optimizer.EvalContext attribute) temperature (pasted._optimizer.EvalContext attribute) to_xyz() (pasted._optimizer.EvalContext method) trust_radius (pasted._config.GeneratorConfig attribute) V validate_charge_mult() (in module pasted._atoms) verbose (pasted._config.GeneratorConfig attribute) W w_atom (pasted._config.GeneratorConfig attribute) w_spatial (pasted._config.GeneratorConfig attribute)